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Brodersen, K. E., Koren, K., Revsbech, N. P., and Kühl, M. (2019) Strong leaf surface basification and CO2 limitation of seagrass induced by epiphytic biofilm microenvironments. Plant Cell & Environment [ABSTRACT] Brodersen, K. E., Trevathan-Tackett, S. M ., Nielsen, D. A., Connolly, R. M,. Lovelock ,C.E., Atwood ,T. B., and Macreadie, P . I. (2019) Oxygen consumption and sulfate reduction in vegetated coastal habitats: effects of physical disturbance. Fisher, A., Wangpraseurt, D., Larkum, A.W.D., Johnson, M., Kühl, M., Wong, H., Chen, M., and Burns, B. (2019) Correlation of bio-optical properties with photosynthetic pigment and microorganism distribution in microbial mats from Hamelin Pool, Australia. FEMS Microbiology Ecology 95: fiy219. [ABSTRACT] Haro, S., Brodersen, K. E., Bohórquez, J., Papaspyrou, S., Corzo, A., and Kühl, M. (2019) Radiative energy budgets in a microbial mat under different irradiance and tidal conditions. Jacques, S. L., Wangpraseurt, D., and Kühl M. (2019) Optical properties of living corals determined with diffuse reflectance spectroscopy. Koren, K., Gravesen, N. K., Santella, M., Mosshammer, M., Dmitriev R. I., Borisov, S. M., Kühl, M., and Laursen, B. W. (2019) Evaluation of ebselen-azadioxatriangulenium as redox-sensitive fluorescent intracellular probe and as indicator within a planar redox optode. Koren, K., Mosshammer, M., Scholz, V., Borisov, S. M., Holst, G., and Kühl, M. (2019) Luminescence lifetime based chemical imaging – a comparison between time-domain and frequency-domain based camera systems. Martinez, J., Nishihara, A., Lichtenberg, M., Trampe, E., Kawai, S., Tank, M., Kühl, M., Hanada, S., and Thiel, V (2019) Diversity and vertical distribution of bacteria within a hot spring-associated phototrophic microbial mat (Nakabusa Hot Springs, Japan). Mosshammer, M., Scholz, V. V., Holst, G., Kühl, M., and Koren, K. (2019) Luminescence lifetime imaging of O2 with a frequency domain based camera system. Mosshammer, M., Brodersen, K. E., Kühl, M., and Koren K. (2019) Nanoparticle-based luminescence imaging of chemical species and temperature in aquatic systems: a review. Ordoñez A., Wangpraseurt D., Lyndby N., Kühl M., and Diaz-Pulido G. (2019) Elevated CO2 leads to enhanced photosynthesis but decreased growth in early life stages of reef building coralline algae. Spicer, G. L. C., Eid, A., Wangpraseurt, D., Swain, T. D., Winkelmann, J. A., Yi, J., Kühl, M., Marcelino, L. A., and Backman, V. (2019) Measuring light scattering and absorption properties of coral tissue and skeleton with Inverse Spectroscopic Optical Coherence Tomography (ISOCT). Tetu, S. G., Sarker, I., Schrameyer, V., Pickford, R., Elbourne, L. D. H., Moore, L. R., and Paulsen, I. T.. (2019) Plastic leachates impair growth and oxygen production in Prochlorococcus, the ocean’s most abundant photosynthetic bacteria. Wangpraseurt D., Jacques S. L., Lyndby N., Holm J. B., Ferrier-Pages C., and Kühl M. (2019) Microscale light management and inherent optical properties of intact corals studied with optical coherence tomography. Wangpraseurt, D., Lichtenberg, M., Jacques, S. L., Larkum, A. W. D., and Kühl, M. (2019) Optical properties of corals contrive variable chlorophyll fluorescence measurements. 2018 Brodersen, K. E., Siboni, N., Nielsen, D. A., Pernice, M., Ralph, P. J., Seymour, J., and Kühl, M. (2018) Seagrass rhizosphere microenvironment alters plant-associated microbial community composition. Brodersen, K. E., Kühl, M., Nielsen, D. Aa., Pedersen, O., and Larkum, A. W. D. (2018) Rhizome, root/sediment interactions, aerenchyma and internal pressure changes in seagrasses. Chapter 18 in: Seagrasses of Australia. Eds. AWD Larkum, G Kendrick, PJ Ralph. Springer, pp. 393-418. [ABSTRACT] Frommlet, J. C., Wangpraseurt, D., Sousa, M. L., Guimarães, B., da Silva, M. M., Kühl, M., and Serôdio, J. (2018) Goessling, J. W., Su, Y., Cartaxana, P., Maibohm, C., Rickelt, L. F., Trampe, E., Walby, S., Wangpraseurt, D., Wu, X., Ellegaard, M., and Kühl, M. (2018) Structure-based optics of centric diatom frustules: Modulation of the in vivo light field for efficient diatom photosynthesis. Goessling, J. W., Frankenbach, S., Ribeiro, L., Serôdio, J., and Kühl, M. (2018) Modulation of the light field related to valve optical properties of raphid diatoms: implications for niche differentiation in the microphytobenthos. Goessling, J. W., Su, Y., Maibohm, C., Ellegaard, M, and Kühl, M. (2018) Differences in the optical properties of valve and girdle band in a centric diatom. Herschend, J., Koren, K., Røder, H. L., Brejnrod, A., Kühl, M., and Burmølle, M. (2018) In vitro community synergy between bacterial soil isolates can be facilitated by pH stabilisation of the environment.. Koren, K., and Kühl, M. (2018) Optical O2 sensing in aquatic systems and organisms. In: D. B. Papkovsky and R. Dmitriev (ed.), Quenched-phosphorescence detection of molecular oxygen: Applications in life sciences. Royal Society of Chemistry, Detection Science Series 11: 145-174. Larkum, A. W. D., Sablok, G., Pernice, M., Schliep, M., Davey, P., Szabo, M., Raven, J. A., Lichtenberg, M., Brodersen, K. E., and Ralph, P. J. (2018). Photosynthesis and metabolism of seagrasses. Chapter 16 in Seagrasses of Australia. Eds. AWD Larkum, G Kendrick, PJ Ralph. (IN PRESS) Mosshammer, M., Schrameyer, V., Jensen, P. Ø., Koren, K., and Kühl, M. (2018) Extracellular hydrogen peroxide measurements using a flow injection system in combination with microdialysis probes - potential and challenges. Schrameyer, V., York, P., Chartrand K., Ralph, P. J., Kühl, M., Brodersen, K. E., and Rasheed, M. (2018) Contrasting impacts of light reduction on sediment biogeochemistry in deep- and shallow-water tropical seagrass assemblages (Green Island, Great Barrier Reef). Trampe, E., Koren, K., Akkineni A. R., Senwitz C., Krujatz F., Lode A., Gelinsky M, and Kühl M. (2018) Functionalized bioink with optical sensor nanoparticles for O2 imaging in 3D bioprinted constructs. Sønderholm, M., Koren, K., Wangpraseurt, D., Jensen, P. Ø., Kolpen, M., Kragh, K. N., Bjarnsholt, T., and Kühl M. (2018) Tools for studying growth patterns and chemical dynamics of aggregated Pseudomonas aeruginosa exposed to different electron acceptors in an alginate bead model. 2017 Brodersen, K. E., Koren, K., Mosshammer, M., Ralph, P. J., Kühl, M., and Santner, J. (2017) Seagrass-mediated phosphorus and iron solubilisation in tropical sediments. Cartaxana, P., Trampe, E., Kühl, M., and Cruz, S. (2017) Kleptoplast photosynthesis is nutritionally relevant in the sea slug Elysia viridis. Chan, N., Wangpraseurt, D., Kühl, M., and Connolly, S. (2017) Correction for Chan et al., Flow and coral morphology control coral surface pH: Implications for the effects of ocean acidification. Goessling, J. (2017) Biophotonics of diatoms – linking frustule structure to photobiology. Holm, J. B. (2017) Effects of feeding on the bleaching response of the scleractinion coral Pocillopora damicornis: Photosynthesis, respiration and carbon budget. Jensen, P. Ø., Kolpen, M., Kragh, K. N., and Kühl M. (2017) Microenvironmental characteristics and physiology of biofilms in chronic infections of CF patients are strongly affected by the host immune response. Kim, M., Brodersen, K. E., Szabo, M., Larkum, A. W. D., Raven, J. A., Ralph, P. J., and Pernice, M. (2017). Low oxygen affects photophysiology and the level of expression of two carbon metabolism genes in the seagrass Zostera muelleri. Kolpen, M., Lerche, C. J., Kragh, K. N., Sams, T., Jensen, A. S., Koren, K., Line, L., Bjarnsholt, T., Ciofu, O., Moser, C., Kühl, M., Højby, N., Jensen, P. Ø. (2017) Hyperbaric oxygen sensitizes anoxic Pseudomonas aeruginosa biofilm to ciprofloxacin Lichtenberg, M. (2017) Microscale canopy interactions in aquatic phototrophs. Lichtenberg, M., Noerregaard, R. D., and Kühl, M. (2017) Diffusion or advection? Mass transfer and complex boundary layer landscapes of the brown alga Fucus vesiculosus. Lichtenberg, M., Brodersen, K. E., and Kühl, M. (2017) Radiative energy budgets of phototrophic surface-associated microbial communities and their photosynthetic efficiency under diffuse and collimated light. Lichtenberg, M.,Trampe, E. C. L., Vogelmann, T. C., and Kühl, M. (2017) Light sheet microscopy imaging of light absorption and photosynthesis distribution in plant tissue. Lyndby, N. H. (2017) Effects of feeding on the bleaching response of the scleractinion coral Pocillopora damicornis: Light and radiative energy budgets. Mosshammer, M., Kühl, M., and Koren, K. (2017) Possibilities and challenges for quantitative optical sensing of hydrogen peroxide. Chemosensors 5: 28. [ABSTRACT] Feature paper Sønderholm, M., Bjarnsholt, T., Alhede, M., Kolpen, M., Jensen, P. Ø., Kühl, M., and Kragh, K. N. (2017) The consequences of being in an infectious biofilm – microenvironmental conditions governing antibiotic tolerance. Sønderholm, M., Kragh, K. N., Koren, K., Jakobsen, T. H., Darch, S., Alhede, M., Jensen, P. Ø., Whiteley, M., Kühl, M., and Bjarnsholt, T. (2017) Aggregate formation of Pseudomonas aeruginosa in an alginate bead model system exhibits in vivo like characteristics. Trampe, E., Castenholz, R. W., Larsen, J. E., and Kühl, M. (2017) Phototrophic microbes form endolithic biofilms in ikaite tufa columns (SW Greenland). Walpersdorf, E., Kühl, M., Elberling, B., Andersen, T. J., Hansen, B. U., Pejrup, M., Glud, R. N. (2017) In situ oxygen dynamics and carbon turnover in an intertidal sediment (Skallingen, Denmark) Wangpraseurt, D., Holm, J. B., Larkum, A. D. L., Pernice, M., Ralph, P. J., Sugget, D. J., and Kühl, M. (2017) In vivo microscale measurements of light and photosynthesis during coral bleaching: evidence for the optical feedback loop? Wangpraseurt, D., Wentzel, C., Jacques, S. L., Wagner, M., and Kühl, M. (2017) In vivo imaging of coral tissue and skeleton with optical coherence tomography. 2016 Brodersens, K. E. (2016) The seagrass rhizosphere. PhD thesis, Department of Environmental Sciences, University of Technology Sydney, Australia. Cartaxana, P., Ribeiro, L., Gössling, J. W., Cruz, S., and Kühl, M. (2016) Light and O2 microenvironments in two contrasting diatom-dominated coastal sediments. Darphorn, T. (2016) Photopigment dynamics in cyanobacteria and microbial mats. MSc thesis, Department of Biology, Faculty of Science, University of Copenhagen. Hansen, C. M. (2016) Growth and utilization of nitrate by Pseudomonas aeruginosa in novel in vitro biofilm model. MSc thesis, Department of Biology, University of Copenhagen. Hansen, P. J., Ojamäe, K., Berge, T., Trampe, E. C., Nielsen, L. T., Lips, I., and Kühl, M. (2016). Photoregulation in a kleptochloroplastidic dinoflagellate, Dinophysis acuta. Klotz, M. G., Bryant, D. A., Fredrickson , J. K., Inskeep, W. P., and Kühl, M. (eds.) (2016) Systems biology and ecology of microbial mat communities. Frontiers Research Topic Ebook. Klotz, M. G., Bryant, D. A., Fredrickson , J. K., Inskeep, W. P., and Kühl, M. (2016) Editorial: Systems biology and ecology of microbial mat communities. Koren, K., Jakobsen, S. L., and Kühl, M. (2016) In-vivo imaging of O2 dynamics on coral surfaces spray-painted with sensor nanoparticles. Koren, K., Jensen, P. Ø., and Kühl, M. (2016) Development of a rechargeable optical hydrogen peroxide sensor - sensor design and biological application. Lichtenberg, M., Larkum, A. W. D., and Kühl, M. (2016) Photosynthetic acclimation of Symbiodinium in hospite depends on vertical position in the tissue of the scleractinian coral Montastrea curta. Lyndby, N. H., Kühl, M., and Wangpraseurt, D. (2016) Heat generation and light scattering of green fluorescent protein-like pigments in coral tissue. Mosshammer, M., Strobl, M., Kühl, M., Klimant, I., Borisov, S. M., and Koren, K. (2016) Design and application of an optical sensor for simultaneous imaging of pH and dissolved O2 with low cross-talk. Revsbech, N. P., Trampe, E., Lichtenberg, M., Ward, D. M., and Kühl, M. (2016) In situ hydrogen dynamics in a hot spring microbial mat during a diel cycle. Rickelt, L. F., Lichtenberg, M., Trampe, E., and Kühl, M. (2016) Fiber-optic probes for small scale measurements of scalar irradiance. Trampe, E. C. L. (2016) Microenvironmental Ecology of Phototrophs from Extreme Environments. PhD thesis, Department of Biology, Faculty of Science, University of Copenhagen. Trampe, E., Larsen, J.E.N., Glaring, M. A., Stougaard, P., and Kühl, M. (2016) In situ dynamics of O2, pH, light and photosynthesis in ikaite tufa columns (Ikka Fjord, Greenland). Trampe, E., and Kühl, M. (2016) Chlorophyll f distribution and dynamics in cyanobacterial beachrock biofilms. Uppal, H. A., and Aydogan, S. (2016) Hydrogen sulphide dynamics in Pseudomonas aeruginosa. Wangpraseurt, D., Jacques, S. J., Petrieb, T., and Kühl, M. (2016) Monte Carlo modeling of photon propagation reveals highly scattering coral tissue. Wentzel, C. (2016) Coral tissue morphology visualised through optical coherence tomography. MSc thesis, Department of Biology, Faculty of Science, University of Copenhagen. 2015 Behrendt, L., Brejnrod, A., Schliep, M., Sørensen, S. J., Larkum, A. W. D., and Kühl, M. (2015) Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium. Brodersen, K. E., Lichtenberg, M., Paz, L.-C., and Kühl, M. (2015) Epiphyte-cover on seagrass (Zostera marina L.) leaves impedes plant performance and radial O2 loss from the below-ground tissue. Brodersen, K. E., Nielsen, D. A., Ralph, P. J., and Kühl, M. (2015) Oxic microshield and local pH enhancement protects Zostera muelleri from sediment derived hydrogen sulphide. Cartaxana, P., Vieira, S., Ribeiro, L., Rocha, R. J. M., Cruz, S., Calado, R., and da Silva, J. M. (2015) Effects of elevated temperature and CO2 on intertidal microphytobenthoss. Calderon, P. R. C. (2015) Assessment of photopigment composition and photoreaction of three crustose lichens from the Baltic Sea. MSc thesis, Department of Biology, University of Copenhagen. Cruz, S., Cartaxana, P., Newcomer, R., Dionísio, G., Calado, R., Serôdio, J., Pelletreau, K. N.,and Rumpho, M. E. (2015) Photoprotection in sequestered plastids of sea slugs and respective algal sources. Ezequiel, J., Laviale, M., Frankenbach, S., Cartaxana, P., and Serôdio, J. (2015) Photoacclimation state determines the photobehaviour of motile microalgae: The case of a benthic diatom. Jensen, D. B., and Reducha, K. (2015) Assessment of cyanobacterial beachrock biofilms: Adaptations to life under extreme environmental conditions. MSc thesis, Department of Biology, University of Copenhagen. Kaźmierczak, J., Fenchel, T., Kühl, M., Kempe, S., Kremer, B., Łącka, B., and Małkowski, K. (2015) CaCO3 precipitation in multilayered cyanobacterial mats: clues to explain the alternation of micrite and sparite layers in calcareous stromatolites. Kim, Y.-M., Nowack, S., Olsen, M., Becraft, E., Wood, J. M., Thiel, V., Klapper, I., Kühl, M., Bryant, D. A., Fredrickson, J. K., Ward, D. M., and Metz, T. O. (2015) Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms. Kolpen, M, Kragh, K. N., Bjarnsholt, T., Hansen, C. R., Dalbøge, C. S., Hansen, N., Kühl, M., Høiby, N., and Jensen, P. Ø. (2015) Denitrification by cystic fibrosis pathogens - Stenotrophomonas maltophilia is dormant in sputum. Koren, K., and Kühl, M. (2015) A simple laminated paper-based sensor for temperature sensing and imaging. Koren, K., Brodersen, K. E., Jakobsen, S. L., and Kühl, M. (2015) Optical sensor nanoparticles in artificial sediments – a new tool to visualize O2 dynamics around the rhizome and roots of seagrasses. Laviale, M., Ezequiela, J., Paisa, C., Cartaxana, P., and Serôdio, J. (2015) The “crème brûlée” sampler: A new high-resolution method for the fast vertical sampling of intertidal fine sediments. Leal, M. G., Jesus, B., Ezequiel, J., Calado, R., Rocha, R. J. M., Cartaxana, P., and Serodio, J. (2015) Concurrent imaging of chlorophyll fluorescence, chlorophyll a content and green fluorescent proteins-like proteins of symbiotic cnidarians. Nielsen, D. A., Pernice, M., Schliep, M., Kühl, M., Wangpraseurt, D., Jeffries, T., Ralph, P. J., and Larkum, A. W. D. (2015) Microenvironment and phylogenetic diversity of Prochloron inhabiting the surface of crustose didemnid ascidians. Nielsen, M., Revsbech, N. P., and Kühl, M. (2015) Microsensor measurements of hydrogen gas dynamics in cyanobacterial microbial mats. Nord, N. B. (2015) A comparative study on five strains of the chlorophyll d-containing cyanobacteria Acaryochloris adapted to NIR or VIS irradiance. MSc thesis, Department of Biology, University of Copenhagen. Rickelt, L. F. (2015) Development and application of fiber-optic sensors in environmental and life sciences. Ph.D. thesis, Department of Biology, Faculty of Science, University of Copenhagen [PDF] Rickelt, L. F., Ottosen, L. D., and Kühl, M. (2015) Etching of multimode optical glass fibers: A new method for shaping the measuring tip and immobilization of indicator dyes in recessed fiber-optic microprobes. Rocha, R. J. M., Bontas, B., Cartaxana, P., Leal, M. C., Ferreira, J. M., Rosa, R., Serôdio, J. and Calado, R. (2015), Development of a standardized modular system for experimental coral culture. Trampe, E., Hansen, P. J., and Kühl, M. (2015) A comparison of photosynthesis measurements by O2 evolution, 14C assimilation and variable chlorophyll fluorescence during light acclimatization of the diatom Coscinodiscus granii. Wangpraseurt, D. (2015) Microscale optics and coral photobiology. PhD thesis, Department of Environmental Sciences, University of Technology Sydney, Australia Vieira, S., Cartaxana, P., Máguas, C, Marques da Silva, J. (2015) Photosynthesis in estuarine intertidal microphytobenthos is limited by inorganic carbon availability. 2014 Behrendt, L., Nielsen, J. L., Sørensen, S. J., Larkum, A. W. D., Winther, J. R., and Kühl, M. (2014) Rapid TaqMan-based quantification of chlorophyll d-containing cyanobacteria in the genus Acaryochloris Brodersen, K. E., Lichtenberg, M., Ralph, P. J., Kühl, M., Wangpraseurt, D. (2014) Radiative energy budget reveals high photosynthetic efficiency in symbiont-bearing corals. Brodersen, K. E., Nielsen, D. A.,Ralph, P. J., and Kühl, M. (2014) A split flow-chamber with artificial sediment to examine the below-ground microenvironment of aquatic macrophytes. Hutter, L. H., Müller, B. J., Koren, K.. Borisov, S. M., and Klimant, I. (2014) Robust optical oxygen sensors based on polymer-bound NIR-emitting platinum(II)-benzoporphyrins. Kolpen, M., Bjarnsholt, T., Moser, C. Hansen, C. R., Rickelt, L. F., Kühl, M., Hempel, C., Pressler, T., Høiby, N., and Jensen, P. Ø. (2014) Nitric oxide production by polymorphonuclear leukocytes in infected cystic fibrosis sputum consumes oxygen. Kolpen, M., Kühl, M., Bjarnsholt, T., Moser, C. Hansen, C. R., Liengaard, L., Kharazmi, A., Pressler, T., Høiby, N., and Jensen, P. Ø. (2014) Nitrous oxide production in sputum from cystic fibrosis patients with chronic Pseudomonas aeruginosa lung infection. Kragh, K. N., Alhede, M., Jensen, P. Ø., Moser, C., Jacobsen, C. S., Seier, S., Eickhardt, S., Trøstrup, H., Christoffersen, L., Hougen, H.-P., Rickelt, L. F., Kühl, M., Høiby, N., and Bjarnsholt, T. (2014) Polymorphonuclear leukocytes restrict the growth of Pseudomonas aeruginosa in lungs of cystic fibrosis patients. Li, R., Pedersen, K. S., Liu, Y., Pedersen, H. S., Lægdsmand, M., Rickelt, L. F., Kühl, M., and Callesen, H. (2014) Effect of red light on development and quality of mammalian embryos. Liengaard, L., Figueiredo, V., Markfoged, R., Revsbech, N. P., Nielsen, L. P., Prast, A. H., and Kühl, M. (2014) Hot moments in tropical wetland soil: Production, consumption and emission of N2O in soil cores from the Pantanal and the Amazon. Line, L., Alhede, M., Kolpen, M., Kühl, M., Ciofu, O., Bjarnsholt, T., Moser, C., Toyofuku, M., Nomura, N., Høiby, N., and Jensen, P. Ø. (2014) Physiological levels of nitrate support anoxic growth by denitrification of Pseudomonas aeruginosa at growth rates reported in cystic fibrosis lungs and sputum. Petrou, K., Trimborn, S., Kühl, M., and Ralph, P. J. (2014) Desiccation stress in two intertidal beachrock biofilms. Schrameyer, V., Wangpraseurt, D., Hill, R., Kühl, M., Larkum, A. W. D., Ralph, P. J. (2014) Light respiratory processes and gross photosynthesis in two scleractinian corals. Sinutok, S., Hill, R., Kühl, M., Doblin, M. A., and Ralph, P. J. (2014) Ocean acidification and warming alter photosynthesis and calcification of the symbiont-bearing foraminifera Marginopora vertebralis. Szabó, M., Wangpraseurt, D.,Tamburic, B., Larkum, A. W. D., Sugget, D., Kühl, M., and Ralph, P. J. (2014) Functional light absorption and absolute electron transport rates in the coral Pocillopora damicornis. Wangpraseurt, D., Polerecky, L., Larkum, A. W. D., Ralph, P. J., Nielsen, D. A., Pernice, M., and Kühl, M. (2014) The in situ light microenvironment of corals. Wangpraseurt, D., Tamburic, B., Szabó, M., Suggett, D., Ralph, P. J., and Kühl, M. (2014) Spectral effects on Symbiodinium photobiology studied with a programmable light engine. Wangpraseurt, D., Larkum, A. W. D., Franklin, J., Szabo, M., Ralph, P. J, and Kühl, M. (2014) Lateral light transfer ensures efficient resource distribution in symbiont-bearing corals. Behrendt, L., Staal, M., Cristescu, S. M., Harren, F. J. M., Schliep, M., Larkum, A. W. D., and Kühl, M. (2013) Reactive oxygen production induced by visible and near-infrared radiation in chlorophyll-d containing cyanobacteria [v2; ref status: indexed, http://f1000r.es/z7]. Behrendt, L. (2013) Microenvironmental and molecular ecology of the cyanobacteria Prochloron and Acaryochloris. PhD thesis, Department of Biology, University of Copenhagen Bjarnsholt, T., Alhede,M., Alhede, M., Eickhardt-Sørensen, S. R., Moser, C., Kühl, M., Jensen, P. Ø., and Høiby N. (2013) The in vivo biofilm. Elberling, B., Kühl, M., Glud, R. N., Jørgensen, C. J., Askaer, L., Rickelt, L. F., Joensen, H. P., Larsen, M., and Liengaard, L. (2013) Methods to assess high-resolution subsurface gas concentrations and gas fluxes in wetland ecosystems. In: R.D. DeLaune, K.R. Reddy, C.J. Richardson, and J.P. Megonigal (Eds.), Methods in Biogeochemistry of Wetlands. Soil Science Society of America Inc., Madison, pp. 949-966. Etzerodt, A. P. (2013) Microscale distribution of small zooplankton in a sub-Arctic fjord in Greenland. MSc thesis, Department of Biology, University of Copenhagen and DTU/Aqua, Technical University of Denmark. Jakobsen, T. H., Hansen, M. A., Jensen, P. Ø., Hansen, L., Riber, L., Cockburn, A., Kolpen, M, Hansen, C. R., Eickhardt, S., Hansen, M., Kerpedjiev, P., Alhede, M., Qvortrup, K., Burmølle, M., Moser, C., Kühl, M., Ciofu, O., Givskov, M, Sørensen, S. J., Høiby, N., and Bjarnsholt, T. (2013) Complete genome sequence of the cystic fibrosis pathogen Achromobacter xylosoxidans NH44784-1996 complies with important pathogenic phenotypes. Klatt, C. G., Liu, Z., Ludwig, M., Kühl, M., Jensen, S. I., Bryant, D. A., and Ward, D. M. (2013) Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring. Li, Y., Larkum, A. W. D., Schliep, M., Kühl, M., Neilan, B., and Chen, M. (2013) Newly isolated Chl d-containing cyanobacteria. In: Kuang, T., Lu, C., & Zhang, L. [Eds.] Photosynthesis Research for Food, Fuel and the Future: Proceedings of the 15th International Congress on Photosynthesis. August 22-23, Beijing, China. Zhejiang University Press,Springer-Verlag GmbH (ISBN: 978-3-642-32033-0), pp. 686–90. [PDF] Liengaard, L., Nielsen L. P., Revsbech, N. P., Elberling, B., Priemé, A., Prast, A. E., and Kühl, M. (2013) Extreme emission of N2O from tropical wetland soil (Pantanal, South America). Rickelt, L. F., Askaer, L., Walpersdorf, E., Elberling, B., Glud, R. N., and Kühl, M. (2013) An optode sensor array for long term in situ measurements of O2 in soil and sediment. 2012 Al-Najjar, M., de Beer, D., Kühl, M., and Polerecky, L. (2012) Light utilization efficiency in photosynthetic microbial mats. Behrendt, L., Larkum, A. W. D., Trampe, E., Norman, A.,,Sørensen, S. J., and Kühl, M. (2012) Microbial diversity of biofilm communities in microniches associated with the didemnid ascidian Lissoclinum patella. Behrendt, L., Schrameyer, V., Qvortrup, K., Lundin, L., Sørensen, S. J., Larkum, A. W. D., and Kühl, M. (2012) Biofilm growth and near infrared radiation-driven photosynthesis of the chlorophyll d-containing cyanobacterium Acaryochloris marina. Brodersen, K. E. (2012) Light energy budgets of surface-associated microbial communities. MSc thesis, Department of Biology, University of Copenhagen and DTU/Aqua, Technical University of Denmark. Er, Ö. (2012) Prevention and treatment of bacterial biofilm infection in the soft tissue filler Aquamid. MSc thesis, Department of Biology, University of Copenhagen. Fabricius-Dyg, J., Mistlberger, G., Staal, M., Borisov, S. M., Klimant, I., and Kühl, M. (2012) Imaging of surface O2 dynamics in corals with magnetic micro optode particles. Huusgaard, R. S., Vismann, B., Kühl, M., Macnaugton, M., Colmander, V., Rouse, G., Glover, A. G., Dahlgren T., and Worsaae, K. (2012) The potent respiratory system of Osedax mucofloris (Siboglinidae, Annelida) - a prerequisite for the origin of bone-eating Osedax? Jimenez, I. M., Larkum, A. W. D., Ralph, P. J., and Kühl, M. (2012) Thermal effects of tissue optics in symbiont-bearing reef building corals. Jimenez, I. M., Larkum, A. W. D., Ralph, P. J., and Kühl, M. (2012) In situ thermal dynamics of shallow water corals is affected by tidal patterns and irradiance. Jokic, T., Borisov, S. M., Saf, R., Nielsen, D., Kühl, M., and Klimant, I. (2012) Near-infrared fluorescent pH indicators and sensors based on BF2-chelated tetraarylazadipyrromethene dyes. Kühl, M., Behrendt, L., Trampe, E., Qvortrup, K., Borisov S. M., Klimant, I., Schreiber, U., and Larkum, A. W. D. (2012) Microenvironmental ecology of the chlorophyll b-containing symbiotic cyanobacterium Prochloron in the didemnid ascidian Lissoclinum patella. Larkum, A. W. D., Chen, M., Li, Y., Schliep, M., Trampe, E., West, J., Salih, A., and Kühl, M. (2012) A novel epiphytic chlorophyll d-containing cyanobacterium isolated from a mangrove-asscociated red alga. Lichtenberg, M. (2012) Light energy budgets of surface-associated microbial communities. MSc thesis, Department of Biology, University of Copenhagen and DTU/Aqua, Technical University of Denmark. Liu, Z., Klatt, C. G., Ludwig, M., Rusch, D. B., Jensen, S. I., Kühl, M., Ward, D. M., and Bryant, D. A. (2012) Candidatus Thermochlorobacter aerophilum: an aerobic chlorophotoheterotrophic member of the phylum Chlorobi. Prest, E. I., Staal, M., Kühl, M., van Loosdrecht, M. C. M., and Vrouwenvelder, J. S. (2012) Quantitative measurement and visualization of biofilm O2 consumption rates in membrane reactor systems. Sinutok, S., Hill, R., Doblin, M. A., Kühl, M., and Ralph, P. J. (2012) Microenvironmental changes support evidence of photosynthesis and calcification inhibition in Halimeda under ocean acidification and warming. Wangpraseurt, D., Larkum, A. W. D., Ralph, P. J, and Kühl, M. (2012) Light gradients and optical microniches in coral tissues. 2011 Aaness, K., Rickelt, L. F., Johansen, H. K., von Buchwald, C., Pressler, T., Høiby, N., and Jensen, P. Ø. (2011) Decreased mucosal oxygen tension in the maxillary sinuses in patients with cystic fibrosis. Becraft, E., Cohan, F., Kühl, M., Jensen, S. I., and Ward, D. M. (2011) Fine-scale distribution patterns of Synechococcus ecological diversity in the microbial mat of Mushroom Spring, Yellowstone National Park. Behrendt, L., Trampe, E., Larkum, A. W. D., Qvortrup, K., Norman, A., Chen, M., Ralph, P. J., Sørensen, S. J., and Kühl, M. (2011) Endolithic Chlorophyll d containing cyanobacteria. Cooper, T. F., Ulstrup, K. E., Dandan, S. S., Heyward, A., Kühl, M., Muirhead, A., O’Leary, R., Ziersen, B., and van Oppen, M. J. H. (2011) Niche specialisation of reef-building corals in the mesophotic zone: metabolic trade-offs between divergent Symbiodinium types. Elberling, B, Askaer L, Jørgensen, C. J., Joensen, H. P., Kühl, M., Glud, R. N., and Lauritsen, F. R. (2011) Linking soil O2, CO2 and CH4 concentrations in a wetland soil: implications for CO2 and CH4 fluxes. Hansen, M. O., Buchardt, B., Kühl, M., and Elberling, B. (2011) The fate of the submarine ikaite tufa columns in southwest Greenland under changing climate conditions. Jensen, S. I., Stenou, A.-S., Bhaya, D., Kühl, M., and Grossman, A. R. (2011) In situ dynamics of O2, pH and cyanobacterial transcripts associated with CCM, photosynthesis and detoxification of ROS. Jimenez, I. M., Kühl, M., Larkum, A. W. D., and Ralph, P. (2011) Effects of flow and colony morphology on the thermal boundary layer of corals. Kaniewska, P., Magnusson, S. H., Anthony, K. R. N., Reef, R., Kühl, M., and Hoegh-Guldberg, O. (2011) The importance of macro versus micro structure in modulating irradiance inside coral colonies. Klatt, C. G., Wood, J. M., Rusch, D. B., Bateson, M. M., Heidelberg, J. F., Grossman, A. R., Bhaya, D., Cohan, F. M., Kühl, M., Bryant, D. A., and Ward, D. M. (2011) Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential. Kühl, M. (2011) New insights into Mediterranean cold seep ecosystems - editorial comment on the feature article by Ritt et al. Kragh, K. N. (2011) Growth kinetics of Pseudomonas aeruginosa. MSc thesis, Department of Biology, University of Copenhagen. Larkum, A. W. D., Salih, A., and Kühl, M. (2011) Rapid mass movement of chloroplasts into new segments of the calcifying siphonalean green alga Halimeda macroloba. Liengård Holten Møller, L. (2011) Emission of N2O in the Pantanal - Nitrogen cycling in seasonally flooded tropical wetland soil. PhD thesis, Department of Biology, University of Copenhagen. Liengaard, L., Nielsen, L. P., Revsbech, N. P., Elberling, B., Prieme, A., Prast, A. E., and Kühl, M. (2011) Effects of flooding cycles in the Pantanal on the turnover of soil nitrogen pools and emission of N2O. Staal, M., Borisov, S., Rickelt, L. F., Klimant, I., and Kühl, M. (2011) Ultrabright planar optodes for luminescence life-time based microscopic imaging of O2 dynamics in biofilms. Staal, M., Prest, E., Vrouwenvelder, H., Rickelt, L. F., and Kühl, M. (2011) A simple optode based imaging technique to measure O2 distribution and dynamics in tap water biofilms. Trampe, E., Kolbowski, J., Schreiber, U., and Kühl, M. (2011) Rapid assessment of different oxygenic phototrophs and single cell photosynthesis with multicolour variable chlorophyll fluorescence imaging. Ulstrup, K. E., Kühl, M., van Oppen, M. J. H., Cooper, T. F., and Ralph, P. J. (2011) Variation in photosynthesis and respiration in geographically distinct populations of two reef-building coral species. 2010 Andersen, S. B., Vestergaard, M. L., Ainsworth, T. D., Hoegh-Guldberg, O. and Kühl, M. (2010) Acute tissue death (white syndrome) affects the microenvironment of tabular Acropora corals. Al-Najjar, M., de Beer, D., Jørgensen, B. B., Kühl, M. and Polerecky, L. (2010) Conversion and conservation of light energy in a photosynthetic microbial mat ecosystem. Askaer, L., Elberling, B., Glud, R. N., Kühl, M., Lauritsen, F. R., and Joensen, H. P. (2010) Soil heterogeneity effects on O2 distribution and CH4 emissions from wetlands: In situ and mesocosm studies with planar O2 optodes and membrane inlet mass spectrometry. Jensen, S. I. (2010) In situ gene expression and ecophysiology of thermophilic cyanobacteria. PhD thesis, Department of Biology, University of Copenhagen. Kolpen, M., Bjarnsholt, T., Moser, C., Hansen, C. R., Kühl, M., Høiby, N., and Jensen, P. Ø. (2010) Nitric oxide production by polymorphonuclear leukocytes in sputum from cystic fibrosis patients with chronic lung infection. Spilling, K., Greve, T. M., Titelman, J., and Kühl, M. (2010) Microsensor measurements of the external and internal microenvironment of Fucus vesiculosus. Trampe, E. (2010) Comparison of methods for estimating photosynthesis and the functional heterogeneity of photosynthesis in marine phototrophs. MSc thesis, Department of Biology, University of Copenhagen. 2009 Bay, L. K., Ulstrup, K. E., Nielsen, H. B., Jarmer, H., Goffard, N., Willis, B. L., Miller, D. J. and Van Oppen, M. (2009) Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora. Cooper, T. F., and Ulstrup, K. E. (2009) Mesoscale variation in the photophysiology of the reef building coral Pocillopora damicornis along an environmental gradient. Cooper, T. F., Ulstrup, K. E., Dandan, S. S., Roger, L., van Oppen, M. J. H., Heyward, A. and Kühl, M. (2009) Characterising the physiological patterns of photoacclimation of deep water reef building corals at Scott Reef, Western Australia. Preliminary report on photobiology. Report to the Browse Joint Venture Partners. Australian Institute of Marine Science,
Cooper, T. F., Dandan, S. S., Heyward, A., Kühl, M., McKinney, D. W., O’Leary R., Ulstrup, K. E., van Oppen, M. J. H., and Ziersen B. (2009) Characterising the genetic connectivity and photobiology of deep water reef building corals at Scott Reef, Western Australia. Report to the Browse Joint Venture Partners. Australian Institute of Marine Science, Perth Western Australia, 78 pp Dandan, S. S. (2009) Light response of host pigments in Favites sp. MSc thesis, Department of Biology, University of Copenhagen. Glud, R. N., Woelfel, J., Karsten, U., Kühl, M. and Rysggard, S. (2009) Benthic microalgal production in the Arctic: Status of the current database. Hill, R., Ulstrup, K. E., and Ralph, P. J. (2009) Temperature induced changes in thylakoid membrane thermostability of cultured, freshly isolated, and expelled zooxanthellae from scleractinian corals. Jimenez-Denness, I. M. (2009) Coral thermal microclimate : investigating the effects of irradiance, flow and coral thermophysical properties. PhD thesis, University of Technology Sydney, Australia. 2008
D'Imperio, S., Lehr, C. R., Oduro, H., Druschel, G., Kühl, M. and McDermott, T. R. (2008) The relative importance of H2 and H2S as energy sources for primary production in geothermal springs. Jimenez, I. M., Kühl, M., Larkum, A. W. D., and Ralph, P. (2008) Heat budget and thermal microenvironment of shallow-water corals: Do massive corals get warmer than branching corals? Kühl, M., Holst, G., Larkum, A. W. D., and Ralph, P. J. (2008) Imaging of oxygen dynamics within the endolithic algal community of the massive coral Porites lobata (Dana). Kühl, M., and Polerecky, L. (2008) Functional and structural imaging of phototrophic microbial commmunities and symbioses. Kühl, M. (2008) Togtben 6. Fra Accra til Cape Town 3.-18- oktober 2006 (Danish) In: Galathea 3, 2006-2007. Dansk Ekspeditionsfond, Thanning & Appel, pp. 61-68. Roff, G., Kvennefors, E. C. E., Ulstrup, K. E., Fine, M., and Hoegh-Guldberg, O. (2008) Coral disease physiology: the impact of Acroporid white syndrome upon Symbiodinium. Roff, G., Ulstrup, K. E., Fine, M., Ralph, P. J., and Hoegh-Guldberg, O. (2008) Spatial heterogeneity of photosynthesis in coral disease-like syndromes from the Great Barrier Reef. Steunou, A.-S., Jensen, S. I., Brecht, E., Becraft, E. D., Bateson, M. M., Kilian, O., Bhaya, D., Ward, D. M., Peters, J. W., Grossman, A. R., and Kühl, M. (2008) Regulation of nif gene expression and the energetics of N2 fixation over the diel cycle in a hot spring microbial mat. Ulstrup, K. E., Hill, R., van Oppen, M. J. H., Larkum, A.W. D., and Ralph, P. J. (2008) Seasonal variation in the photo-physiology of homogeneous and heterogeneous Symbiodinium consortia of two scleractian corals. Ward, D. M., Cohan, F. M., Bhaya, D., Grossman, A., Kühl, M., and Heidelberg, J. (2008) Genomics, environmental genomics and the issue of microbial species. 2007 Boström, K.H., Riemann, L., Kühl, M., and Hagström, Å. (2007) Isolation and gene quantification of heterotrophic N2-fixing bacterioplankton in the Baltic Sea. Frisch, A. J., Ulstrup, K. E., and Hobbs, J.-P. (2007) The effects of clove oil on coral: an experimental evaluation using Pocillopora damicornis (Linnaeus). Glud, R.N., Rysgaard, S., Kühl, M., and Hansen, J. W. (2007) The sea-ice in Young Sound: Implications for C cycling. In: S. Rysgaard, R. N. Glud and P. B. Christensen (eds.), Changes in Marine Arctic Production, Jensen, S. I., Kühl, M., and Prieme, A. (2007) Different bacterial communities in the rhizoplane and bulk sediment of the seagrass Zostera marina. Krause-Jensen, D., Kühl, M., Christensen, P. B., and Borum, J. (2007) Benthic Primary Production. In: S. Rysgaard, R. N. Glud and P. B. Christensen (eds.), Changes in Marine Arctic Production, Kühl, M., Chen, M., and Larkum, A. W. D. (2007) Biology of the Chlorophyll d-containing cyanobacterium Acaryochloris marina. In: J. Seckbach (ed.), Algae and Cyanobacteria in Extreme Environments. Springer Berlin, pp. 101-123. [ABSTRACT] [PDF] Kühl, M., Rickelt, L. F., and Thar, R. (2007) Combined imaging of bacteria and oxygen in biofilms. Magnusson, S.H., Fine, M., and Kühl, M. (2007) Light microclimate of endolithic phototrophs in the scleractinian corals Montipora monasteriata and Porites cylindrica. Ralph, P. J., Larkum, A. W. D., and Kühl, M. (2007) Photobiology of endolithic microorganisms in living coral skeletons: 1. Pigmentation, spectral reflectance and variable chlorophyll fluorescence analysis of endoliths in the massive corals Cyphastrea serailia, Porites lutea and Goniastrea australensis. Roeselers, G., Norris, T.B., Castenholz, R.W., Rysgaard, S., Glud, R.N., Kühl, M., and Muyzer, G. (2007) Diversity of phototrophic bacteria in microbial mats from Arctic hot springs (Greenland). Staal, M., Thar, R., Kühl, M., van Loosdrecht, M. C. M., Wolf, G., de Brouwer, J. F. C., and Rijstenbil, J. W. (2007) Carbon isotope fractionation in developing natural phototrophic biofilms. Ulstrup, K. E. (2007) Spatial and temporal dynamics of photosynthesis regulation of genetically define coral/algal symbiosis associations. PhD thesis, Department of Environmental Sciences, University of Technology, Sydney, 158 pp. (Listed on the Chancellors list of the 6 best PhD theses at UTS that year). Ulstrup, K. E., Kühl, M., and Bourne, D. G. (2007) Zooxanthellae harvested by ciliates associated with brown band syndrome of corals remain photosynthetically competent. Ulstrup, K. E., van Oppen, M. J. H., Kühl, M., and Ralph, P. J. (2007) Inter-polyp genetic and physiological characterisation of Symbiodinium in an Acropora valida colony. 2006 Glud, R.N., and Kühl, M. (2006) Havbundens stofomsætning (Danish). In: T. Fenchel (ed.), Havet, a volume in K. Sand-Jensen (ed.), Naturen i Danmark. Gyldendal, Copenhagen, chapter 16, pp.371-394. Jensen, S. I. (2006) Bacteria and microenvironmental conditions in the rhizosphere of Zostera marina. MSc. thesis, Department of Biology, University of Copenhagen, 111 pp. Magnusson, S. H. (2006) Endolithic communities in corals. MSc thesis, Department of Biology, University of Copenhagen. Steunou, A. S., Bhaya, D., Bateson, M., Melendrez, M., Ward, D. M., Brecht, E., Peters, J. W., Kühl, M. and Grossman, A. (2006) In situ analysis of nitrogen fixation and metabolic switching in unicellular thermophilic cyanobacteria inhabiting hot spring microbial mats. Ulstrup, K. E., Ralph, P. J., Larkum, A. W. D., and Kühl, M. (2006) Intra-colonial variability in light acclimation of zooxanthellae in coral tissues of Pocillopora damicornis. Ulstrup, K. E., Berkelmans, R., Ralph, P. J., and van Oppen M. J. H. (2006) Variation in bleaching sensitivity of two coral species across a latitudinal gradient on the Great Barrier Reef: The role of zooxanthellae. Ward, D. M., Bateson,, M. M., Ferris, M. J., Kühl, M., Wieland, A., Koeppel, A., and Cohan, F. M. (2006) Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (
Wieland, A., and Kühl, M. (2006) Regulation of photosynthesis and oxygen consumption in a hypersaline cyanobacterial mat (Camargue, France) by irradiance, temperature, and salinity. 2005 Ferris, M. J., Sheehan, K., Kühl, M., Cooksey, K., Cooksey, B., Harvey, R., and Henson, J. M. (2005) Algal species and light microenvironment in a low pH, geothermal microbial mat community. Jensen, S. I., Kühl, M., Glud, R.N., Jørgensen, L. B., and Priemé, A. (2005) Oxic microzones and radial oxygen loss from roots of Zostera marina. Köhler-Rink, S., and Kühl, M. (2005) The chemical microenvironment of the symbiotic planktonic foraminifer Orbulina universa. König, B., Kohls, O., Holst, G., Glud, R. N., and Kühl, M. (2005) Fabrication and test of sol-gel based planar oxygen optodes for use in aquatic sediments. Kühl, M., Chen, M., Ralph, P. J., Schreiber, U., and Larkum, A. W. D. (2005) A niche for cyanobacteria containing chlorophyll d. Kühl, M. (2005) Optical microsensors for analysis of microbial communities. Kühl, M. (2005) Livet i verdens mindste og ældste økosystemer (Danish). Larkum, A. W. D., and Kühl, M. (2005) Chlorophyll d: the puzzle resolved. Muyzer, G., Yildirim, E., van Dongen, U., Kühl, M., and Thar, R. (2005) Identification of “Candidatus Thioturbo danicus", a micro-aerophilic bacterium building conspicuous veils on sulfidic sediments. Ralph, P. J., Larkum, A. W. D., and Kühl, M. (2005) Temporal patterns in zooxanthellae expulsion during bleaching conditions. Ralph, P.J., Schreiber, U., Gademann, R., Kühl, M., and Larkum, A.W.D. (2005) Coral photobiology studied with a new imaging PAM fluorometer. Thar, R., and Kühl, M. (2005) Complex pattern formation of marine gradient bacteria explained by a simple computer model. Thar, R., and Fenchel, T. (2005) Survey of motile microaerophilic bacterial morphotypes in the oxygen-gradient above a marine sulfidic sediment. Ulstrup, K. E., Hill, R., and Ralph, P. J. (2005) Photosynthetic impact of hypoxia on in hospite zooxanthellae in the scleractinian coral Pocillopora damicornis. van der Meer, M. T. J., Schouten, S., Bateson, M. M., Nübel, U., Wieland, A., Kühl, M., de Leeuw, J. W., Sinninghe Damsté, J. S., and Ward, D. M. (2005) Diel variations in carbon metabolisms of green nonsulfur-like bacteria in alkaline silicious hot spring microbial mats from
Wieland, A., Zopfi, J., Benthien, M., and Kühl, M. (2005) Biogeochemistry of an iron-rich hypersaline microbial mat (Camargue, France): Oxygen, sulfur and carbon cycling. 2004 Benthien, M., Wieland, A., Garcia de Oteyza, T., Grimalt, J. O., Kühl, M. (2004) Oil-contamination effects on a hypersaline microbial mat community (Camargue, France) as studied with microsensors and geochemical analysis. Büdel, B., Weber, B., Kühl, M., Pfanz, H., Sültemeyer, D., and Wessels, D. (2004) Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalisation causes chemical weathering in arid landscapes. Caumette, P., Cohen, Y., Grimalt, J., Herbert, R., and Kühl, M. (eds.) (2004) Role of microbial mats in the bioremediation of hydrocarbon polluted coastal zones. A special issue of Ophelia, Vol. 58(3). Fenchel, T., Thar, R. (2004) "Candidatus Ovobacter propellens", a large conspicuous prokaryote with an unusual motility behaviour. Fourcauns, A., Garcia de Oteyza, T., Wieland, A., Sole, A., Diestra, E., van Bleijswijk, J., Grimalt, J.O., Kühl, M., Esteve, I., Muyzer, G., Caumette, P., Duran, R. (2004) Characterization of functional bacterial groups in a hypersaline microbial mat community (Salins-de-Giraud, Camargue, France). Grunwald, B., and Kühl, M. (2004) A system for imaging variable chlorophyll fluorescence of aquatic phototrophs. Hill, R., Schreiber, U., Gademann, R., Larkum, A.W.D., Kühl, M., and Ralph, P. (2004) Spatial heterogeneity of photosynthesis and the effect of temperature-induced bleaching conditions in three species of corals. Hill, R, Larkum, A.W.D., Frankart, C., Kühl, M., and Ralph, P. (2004) Loss of functional photosystem reaction centre in zooxanthellae of corals exposed to bleaching conditions: using fluorescence rise kinetics. Kühl, M., Glud, R. N., Rysgaard, S., and Pedersen, H. (2004) Microbiological studies in hot springs at Daneborg and Scoresbysund. In: M. Rasch and K. Caning (eds.), Zackenberg Ecological Research Operations, 9th Annual Report, 2003, Copenhagen, Danish Polar Center, Ministry of Science, Technology and Innovation, pp. 72-74. Musat, F., Wieland, A., and Widdel, F. (2004) Marine sediment with surface contamination by oil in microcosms for microbiological studies. Smirnov, A., and Thar, R. (2004) Vertical spatial distribution of gymnamoebae (Rhizopoda, Lobosea) in brackish water sediment. Thar, R., and Kühl, M. (2004) Propagation of electromagnetic waves in mitochondria? 2003 Caumette, P., Bonin. P., Herbert, R., Widdel, F., Grimalt. J., Guerrero, R., Esteve, I., Kühl, M., Cohen, Y., and Muyzer, G. (2003) Role of microbial mats in the biodegradation of oil and hydrocarbons on the coastal zones (MATBIOPOL) In: P. Caumette, C. Eccles, P. Garrigues, M. Krom, and P. Lebaron (eds.), The impact of human activities on the marine environment quality and health: The EC impacts cluster. Proceedings of the first workshop (February 2002, Pau, France). Publications de l'Université de Pau, Pau, pp. 201-223. Ferris, M.J., Kühl, M., Wieland, A., and Ward, D.M. (2003) Light-adapted cyanobacterial ecotypes in a 68°C hot spring mat community revealed by 16S-23S rRNA intervening spacer region variation. Ferris, M.J., Magnuson, T.S., Fagg, J.A., Thar, R., Kühl, M., Sheehan, K.B., and Henson, J.M. (2003) Microbially mediated sulphide production in a thermal, acidic algal mat community in Yellowstone National Park. Kühl, M., Fenchel, T., and Kazmierczak, J. (2003) Growth, structure and calcification potential of an artificial cyanobacterial mat. In: Krumbein, W.E., Paterson D., and Zavarzin G. (eds.), Fossil and recent biofilms, a natural history of life on Earth. Kluwer Acad. Publ., Dordrecht pp. 77-102. [PDF] Larkum, A.W.D., Koch, E.M., and Kühl, M. (2003) Diffusive boundary layers and photosynthesis of the epilithic algal community of coral reefs. Smirnov, A., and Thar, R. (2003) Spatial distribution of gymnamoebae (Rhizopoda, Lobosea) in brackish water sediment at a scale of centimeter and millimeters. Thar, R., and Kühl, M. (2003) Bacteria are not too small for spatial sensing of chemical gradients: An experimental evidence. Thorsen, M., Wieland, A., Ploug, H., Kragelund, C., and Nielsen, P. H. (2003) Distribution and activity of endosymbiotic sulfur bacteria in anoxic aggregates from the hindgut of the sea urchin Echinocardium cordatum. Wieland, A., Kühl, M., McGowan, L., Sole, A., Diestra, E., Esteve, I., Garcia de Oteyza, T., Grimalt, J.O., Fourcans, A., Duran, R., Caumette, P., and Herbert, R.A. (2003) Microbial mats on the Orkney Islands revisited: microenvironment and microbial community composition. 2002 Benthien, M. (2002) Microsensor studies of oil-contaminated microbial mats from the Camargue (France). M.Sc. thesis, Marine Biological Laboratory, University of Copenhagen. Benthien, M., Wieland, A., and Kühl, M. (2002) Microsensor studies of oil-contaminated microbial mats from the Camargue (France). In: P. Caumette (ed.), Proceedings of the 2'nd MATBIOPOL meeting, Barcelona, 12-16 February, 2002, pp. 51-64. Glud, R.N., Kühl, M., Wenzhöfer, F., and Rysgaard, S. (2002) Benthic diatoms of a high Arctic fjord (Young Sound, NE Greenland): importance for ecosystem primary production. Glud, R.N., Rysgaard, S., and Kühl, M. (2002) O2 dynamics and photosynthesis in ice algal communities: quantification by microsensors, O2 exchange rate, 14C-incubations and PAM-fluorometry. Kühl, M., and Larkum, A.W.D. (2002) The microenvironment and photosynthetic performance of Prochloron sp. in symbiosis with didemnid ascidians. In: Seckbach, J. (ed.), Cellular origin and life in extreme habitats Vol. 3: Symbioses, mechanisms and model systems. Kluwer Acad. Publ., Dordrecht, pp. 273-290. [PDF] Nübel, U., Bateson, M.M., Vandieken, V., Wieland, A., Kühl, M., and Ward, D.M. (2002) Microscopic examination of distribution and phenotypic properties of uncultivated Chloroflexus-related bacteria in hot spring microbial mats. Ralph, P., Gademann, R., Larkum, A.W.D., and Kühl, M. (2002) Spatial heterogeneity in active fluorescence and PSII activity of coral tissues. Roberts, R.D., Kühl, M., Glud, R.N., and Rysgaard, S. (2002) Primary production of coralline red algae in a high arctic fjord. Sass, A.M., Eschemann, A., Kühl, M., Thar, R., Sass, H., and Cypionka, H. (2002). Growth and chemosensory behavior of sulfate-reducing bacteria in oxygen-sulfide gradients. Schreiber U., Gademann, R., Bird, P., Ralph, P., Larkum, A.W.D., and Kühl, M. (2002) Apparent light requirement for activation of photosynthesis upon rehydration of dessicated beachrock microbial mats. Thar, R. (2002) Motility of Microorganisms in Oxygen-Sulfide Gradients. Ph.D. thesis, Marine Biological Laboratory, University of Copenhagen, pp. 85. Thar, R. and Kühl, M. (2002) Conspicuous veils formed by vibrioid bacteria on sulfidic marine sediment. Applied and Environmental Microbiology 68: 6310-6320. [PDF] Wieland, A., Zopfi, J., Benthien, M., and Kühl, M. (2002) Biogeochemistry of microbial mats in the Camargue (France). In: P. Caumette (ed.), Proceedings of the 2'nd MATBIOPOL meeting, Barcelona, 12-16 February, 2002, pp. 21-50. 2001 De Beer, D. and Kühl, M. (2001). Interfacial processes and activities in biofilms and microbial mats. In: B. P. Boudreau and B. B. Jørgensen (eds.), The Benthic Boundary Layer. Oxford University Press, Oxford, pp.374-394. [PDF] Glud, R.N., Tengberg, A., Kühl, M., Hall, P., Klimant, I., and Holst, G. (2001) An in situ instrument for planar O2 optode measurements at benthic interfaces. Köhler-Rink, S., and Kühl, M. (2001) Microsensor studies of photosynthesis and respiration in the larger foraminifera Amphistegina lobifera and Amphisorus hemprichii. König, B., Holst, G., Kohls, O., Richter, T., Glud, R.N., and Kühl, M. (2001) Imaging of oxygen distribution at benthic interfaces: a brief review. In: Aller, J.Y., Woodin, S.A., and Aller, R.C. (eds.). Organism-Sediment Interactions. University of South Carolina Press, Columbia, pp. 63-73. Kühl, M. and N.P. Revsbech. (2001) Biogeochemical microsensors for boundary layer studies. In: B. P. Boudreau and B. B. Jørgensen (eds.), The Benthic Boundary Layer. Oxford University Press, Oxford, pp. 180-210. [PDF] Kühl, M., Glud, R.N., Borum, J., Roberts, R., and Rysgaard, S. (2001) Photosynthetic performance of surface associated algae below sea ice as measured with a pulse amplitude modulated (PAM) fluorometer and O2 microsensors. Nübel, U., Bateson, M.M., Madigan, M.T., Kühl, M., and Ward, D.M. (2001) The diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus. Rysgaard, S., Kühl, M., Glud, R.N., and Hansen, J.W. (2001) Seasonality and horizontal patchiness of sea ice algae in a high-Arctic fjord (Young Sound, NE-Greenland). Thar, R., and Fenchel, T. (2001) True chemotaxis in oxygen gradients of the sulfur-oxidizing bacterium Thiovulum majus. Thar, R., and Kühl, M. (2001) On the motility of Marichromatium gracile in response to light, oxygen and sulfide. Thar, R., Kühl, M. and Holst, G. (2001) A fiber-optic fluorometer for microscale mapping of photosynthetic pigments in microbial communities. Wieland, A., van Dusschoten, D., Damgaard, L.R., de Beer, D., Kühl, M., and Van As, H. (2001) Fine-scale measurement of diffusivity in a microbial mat with NMR imaging. Wieland, A., and Kühl, M. (2001) Oxygen cycling in microbial mats from Camargue (France), Ebro Delta (Spain) and mesocosms (Eilat, Israel). In: P. Caumette (ed.), Proceedings of the MATBIOPOL meeting, Marseille 22-25 February, 2001, pp. 25-43. Wieland, A., and Kühl, M. (2001) Oxygen and sulfide cyling in sediments from Orkney Islands. In: P. Caumette (ed.), Proceedings of the MATBIOPOL meeting, Marseille 22-25 February, 2001, pp. 43-62. 2000 Böttcher, M. E., Hespenheide, B., Llobet Brossa, E., Beardsley, C., Larsen, O., Schramm, A., Wieland, A., Böttcher, G., Berninger, U.-G., and Amann, R. (2000) The biogeochemistry, stable isotope geochemistry and microbial community structure of a temperate intertidal mudflat: An integrated study. De Beer, D., Kühl, M., Stambler, N., and Vaki, L. (2000) A microsensor study of light enhanced Ca2+ uptake and photo-synthesis in the reef-building coral Favia sp. Epping, E.H.G., and Kühl, M. (2000) The responses of photosynthesis and oxygen consumption in a cyanobacterial mat. to short-term changes in temperature and irradiance. Fenchel, T., and Kühl, M. (2000) Artificial cyanobacterial mats: Growth, structure, and vertical zonation patterns. Garcia-Pichel, F., Nübel, U., Muyzer, G., and Kühl, M. (2000) On cyanobacterial community diversity and its quantification. In: Bell, C., Brylinski, M., and Johnson-Green, P. (eds.), Microbial Biosystems: New Frontiers. Atlantic Canada Society for Microbial Ecology, Kentville, pp.617-622. Holst, G., Klimant, I., Kohls, O., and Kühl, M. (2000) Optical microsensors and microprobes. In: M. Varney (ed.), Chemical Sensors in Oceanography. Gordon & Breach, pp. 143-188. Köhler-Rink, S., and Kühl, M. (2000) Microsensor analysis of photosynthesis and respiration in larger symbiotic foraminifera: 1.The physico-chemical microenvironment of Amphistegina lobifera, Amphisorus hemprichii and Marginopora vertrebralis. Kühl, M. and Steuckart, C. (2000) Sensors for in situ analysis of sulfide in aquatic systems In: J. Buffle and G. Horvai (eds.), In situ monitoring of aquatic systems. Wiley, Chichester, pp. 121-159. Kühl, M., and Fenchel, T. (2000) Bio-optical characteristics and the vertical distribution of photosynthetic pigments and photosynthesis in an artificial cyanobacterial mat. Salih, A., Larkum, A.W.D., Cox, G., Kühl, M., and Hoegh-Guldberg, O. (2000) Fluorescent pigments in corals are photoprotective. Thar, R., Blackburn, N., and Kühl, M. (2000) A new system for three-dimensional tracking of motile microorganisms. Wieland, A., and Kühl, M. (2000) Irradiance and temperature regulation of oxygenic photosynthesis and O2 consumption in a hypersaline cyanobacterial mat (Solar Lake, Egypt). Wieland, A., and Kühl, M. (2000) Short term temperature effects on oxygen and sulfide cycling in a hyper-saline cyanobacterial mat (Solar Lake, Egypt). <2000 Amman, R. and Kühl, M. (1998). In situ methods for assessment of microorganisms and their activities. Brune, A., and Kühl, M. (1996). pH profiles of the extremely alkaline hindguts of soil-feeding termites (Isoptera: Termitidae) determined with microelectrodes. Dalsgaard, T., Kühl, M., Jensen, K., Revsbech, N.P., and Jørgensen, B.B. (1991). Stofomsætning i biofilm målt med mikrosensorer (Danish). De Beer, D., Schramm, A., Santegoeds, C.M., and Kühl, M. (1997). A nitrite microsensor for profiling environmental biofilms. De Beer, D., Glud, A., Epping, E., and Kühl, M. (1997). A fast responding CO2 microelectrode for profiling in sediments, microbial mats and biofilms. Epping, E.H.G., Khalili, A., and Thar, R. (1999) Photosynthesis and the dynamics of oxygen consumption in a microbial mat as calculated from transient oxygen microprofiles. Eschemann, A., Kühl, M., and Cypionka, H. (1999) Aerotaxis in Desulfovibrio. Fenchel, T., and Kühl, M. (1999) Livet før det højere liv (Danish). Fukshansky-Kazarinova, N., Fukshansky, L., Kühl, M., and Jørgensen, B.B. (1998). Solution of the inverse problem of radiative transfer on the basis of measured internal fluxes. Fukshansky-Kazarinova, N., Fukshansky, L., Kühl, M., and Jørgensen, B. B. (1997). General theory of three-dimensional radiance measurements with optical microprobes. Fukshansky-Kazarinova, N., Fukshansky, L., Kühl, M., and Jørgensen, B. B. (1996). Theory of equidistant three-dimensional radiance measurements with optical microprobes. Garcia-Pichel, F., Kühl, M., Nübel, U., and Muyzer, G. (1999). Salinity-dependent limitation of photosynthesis and oxygen exchange in microbial mats. Glud, R.N., Klimant, I., Holst, G., Kohls, O., Meyer, V., Kühl, M., and Gundersen, J.K. (1999) Adaptation, test and in-situ measurements with O2 microoptodes on benthic landers. Glud, R.N., Kühl, M., Kohls, O., and Ramsing, N.B. (1999). Heterogeneity of oxygen production and consumption in a photosynthetic microbial mat as studied by planar optodes. Holst, G., Grunwald, B., Klimant, I., and Kühl, M. (1999) A luminescence lifetime imaging system using imaging fibers to measure the 2D distribution of O2 in biological samples. Holst, G., Kohls, O., Klimant, I., König, B., Richter, T., and Kühl, M. (1998). A modular luminescence lifetime imaging system for mapping oxygen distribution in biological samples. Holst, G., Kühl, M., and Kohls, O. (1998) MICROX II: a new generation of portable measuring systems for micro-optodes. Holst, G., Kühl, M., Klimant, I., Liebsch, G., and Kohls, O. (1997). Characterization and application of temperature micro-optodes for use in aquatic biology. Holst, G., Glud, R.N., Kühl, M., and Klimant, I. (1997). A microoptode array for fine scale measurements of oxygen distribution. Holst, G., Kühl, M., and Klimant, I. (1995). A novel measuring system for oxygen microoptodes based on a phase modulation technique. Jeroschewski, P., Steuckart, C., and Kühl, M. (1996). An amperometric microsensor for the determination of H2S in aquatic environments. Jørgensen, B.B., and Kühl, M. (1999). Mikrosensoren zur Messung chemischer Parameter (German). Karsten, U., and Kühl, M. (1996). Die Mikrobenmatte - das kleinste Ökosystem der Welt (German). Klimant, I., Kühl, M., Glud, R.N., and Holst, G. (1997). Optical measurement of oxygen and temperature in microscale: Strategies and biological applications. Klimant, I., Holst, G., and Kühl, M. (1997). A simple fiber-optic sensor to detect the penetration of microsensors into sediments and other biological materials. Klimant, I., Holst, G., and Kühl, M. (1995). Oxygen micro-optrodes and their application in aquatic environments. Klimant, I., Meyer, V., and Kühl, M. (1995). Fiber-optic oxygen microsensors, a new tool in aquatic biology. Kohl, O., Holst, G., and Kühl M. (1998) Micro-optodes: the role of fibre tip geometry for sensor. Kohls, O., Klimant, I., Holst, G., and Kühl, M. (1997). Development and comparison of pH microoptodes for use in marine systems. Kohls, O., Klimant, I., Holst, G., and Kühl, M. (1996). Thionine as an indicator for use as a hydrogen sulfide optode. Kühl, M., Steuckart, C., Eickert, G., and Jeroschewski, P. (1998). A H2S microsensor for profiling sediments and biofilms: Application in acidic sediment. Kühl, M., Lassen, C., and Revsbech, N.P. (1997). A simple light meter for measurements of PAR (400-700 nm) with fiber-optic microprobes: application for P vs. I measurements in microbenthic communities. Kühl, M., Glud, R.N., Ploug, H., and Ramsing, N.B. (1996). Microenvironmental control of photosynthesis and photosynthesis-coupled respiration in an epilithic cyanobacterial biofilm. Kühl, M., Cohen, Y., Dalsgaard, T., Jørgensen, B.B., and Revsbech, N.P. (1995). The microenvironment and photo-synthesis of zooxanthellae in scleractinian corals studied with microsensors for O2, pH and light. Kühl, M., and Jørgensen, B.B. (1994). The light field of micro-benthic communities: radiance distribution and microscale optics of sandy coastal sediments. Kühl, M., Lassen, C., and Jørgensen, B.B. (1994a). Light penetration and light intensity in sandy sediments measured with irradiance and scalar irradiance fiber-optic microprobes. Kühl, M., Lassen, C., and Jørgensen, B.B. (1994b). Optical properties of microbial mats: light measurements with fiber-optic microprobes. In: L. J. Stal and P. Caumette (eds.), Microbial Mats: Structure, Development and Environmental Significance. Springer, Berlin, pp. 149-167. [PDF] Kühl, M. (1993). Photosynthesis, O2 respiration and sulfur cycling in a cyanobacterial biofilm. In: R. Guerrero and C. Pedros-Alio (eds.), Trends in Microbial Ecology. Spanish Society for Microbiology, pp. 163-167. Kühl, M., and Jørgensen, B.B. (1992a). Microsensor measurements of sulfate reduction and sulfide oxidation in compact microbial communities of aerobic biofilms. Kühl, M., and Jørgensen, B.B. (1992b). Spectral light measurements in microbenthic phototrophic communities with a fiber-optic microprobe coupled to a sensitive diode array detector. Lassen, C., Ploug, H., Kühl, M., Jørgensen, B.B., and Revsbech, N.P. (1994). Oxygenic photosynthesis and light distribution in marine microbial mats. In: L. J. Stal and P. Caumette (eds.), Microbial Mats: Structure, Development and Environmental Significance. Springer, Berlin, pp. 305-311. [PDF] Nübel, U., Garcia-Pichel, F., Kühl, M., and Muyzer, G. (1999). Quantifying microbial diversity: Morphotypes, 16S rRNA genes, and carotenoids of oxygenic phototrophs in microbial mats. Nübel, U., Garcia-Pichel, F., Kühl, M., and Muyzer, G. (1999) Spatial scale and the diversity of benthic cyanobacteria and diatoms in a salina. Oren, A., Kühl, M., and Karsten, U. (1995). An endoevaporitic microbial mat within a gypsum crust: zonation of phototrophs, photopigments, and light penetration. Ploug, H., Kühl, M., Buchholz-Cleven, B., and Jørgensen, B.B. (1997). Anoxic aggregates an ephemeral phaenomenon in the pelagic environment? Pringault, O., Kühl, M., and de Wit, R. (1999) A microsensor study of the interaction between purple sulfur and green sulfur bacteria in experimental benthic gradients. Pringault, O., Epping, E., Guyoneaud, Khalili, A., and Kühl, M. (1999) Dynamic of anoxygenic photosynthesis in an experimental green sulfur bacterial biofilm. Pringault, O., Kühl, M., de Wit, R., and Caumette, P. (1998) Growth of green sulfur bacteria in experimental benthic oxygen, sulfide, pH and light gradients. Ramsing, N.B., Kühl, M., and Jørgensen, B.B. (1993a). Identification of sulfate reducing bacteria using 16S rRNA binding oligonucleotide probes. In: R. Guerrero and C. Pedros-Alio (eds.), Trends in Microbial Ecology. Spanish Society for Microbiology, pp. 521-525. Ramsing, N.B., Kühl, M., and Jørgensen, B.B. (1993b). Distribution of sulfate-reducing bacteria and O2-H2S in photosynthetic biofilms determined by oligonucleotide probes and microelectrodes. Revsbech, N.P., Jensen, K., Dalsgaard, T., and Kühl, M. (1993). Nitrification and denitrification in biofilms as studied with microsensors. In: H. Ødegaard (ed.), Nitrifying and denitrifying biofilms for wastewater treatment. Nordic Council of Ministers, pp. 33-45. Rink, S., Kühl, M., Beijma, J., and Spero, H. (1998). Photosynthesis and respiration in the symbiont bearing planktonic foraminifera Orbulina universa as studied with microsensors. Schreiber, U., Kühl, M., Klimant, I., and Reising, H. (1996). Measurement of chlorophyll fluorescence within leaves using a modified PAM fluorometer with a fiber-optic microprobe. |
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